MRI Sequence Information

All data were acquired on a Siemens MAGNETOM Prisma 3T scanner (software: syngo MR XA30) at the University of Oregon, using a 64-channel head/neck coil (HeadNeck_64).

Structural Data

T1-weighted (MPRAGE)

Parameter Value
Protocol ABCD_T1w_MPR_vNav
Sequence 3D GR/IR (tfl_mgh_epinav_ABCD)
TR 2500 ms
TE 2.9 ms
TI 1070 ms
Flip angle
Voxel size 1.0 mm isotropic
Matrix 256 × 256 × 176
Acceleration GRAPPA 2×
Sessions ses-01, ses-28, ses-30

T2-weighted (SPACE)

Parameter Value
Protocol ABCD_T2w_SPC_vNav
Sequence 3D SE (space_mgh_epinav_ABCD)
TR 3200 ms
TE 565 ms
Flip angle 120° (variable)
Voxel size 1.0 mm isotropic
Matrix 256 × 256 × 176
Acceleration GRAPPA 2×
Echo train length 190
Sessions ses-01

T2-weighted oblique coronal

Parameter Value
Protocol T2_coronal_1.8
Sequence 2D TSE
TR 11250 ms
TE 84 ms
Flip angle 150°
Voxel size ~0.35 × 0.35 × 1.8 mm (512 × 512 in-plane)
Averages 2
Acceleration GRAPPA 2×
Orientation Oblique coronal (hippocampal long axis)
Sessions ses-01

Diffusion Data

Parameter Value
Protocol cmrr_diff_3shell
Sequence 2D EPI (cmrr_mbep2d_diff)
TR 3000 ms
TE 70 ms
Flip angle 90°
Voxel size 1.8 mm isotropic
Matrix 116 × 116
Multiband factor 3
Acceleration GRAPPA 2×
Partial Fourier 6/8
Diffusion scheme Monopolar, 3-shell
Phase encoding dirs AP, PA, LR, RL
Total readout time 42.0 ms
Sessions ses-01, ses-28

Functional Data

BOLD (all functional tasks)

Parameter Value
Protocol Resting_baseline / task-specific
Sequence 2D EPI (cmrr_mbep2d_bold)
TR 1500 ms
TE 29 ms
Flip angle 90°
Voxel size 1.7 mm isotropic
Matrix 124 × 124
Slices 69 (23 per MB group × 3)
Multiband factor 3
Acceleration GRAPPA 2×
Phase encoding AP (j−)
Total readout time 36.3 ms
Effective echo spacing 0.295 ms

All functional tasks use identical acquisition parameters. Task-specific protocol names vary but the underlying sequence is the same.

Fieldmaps

Spin-echo EPI (for distortion correction)

Parameter Value
Protocol se_epi_ap / se_epi_pa
Sequence 2D SE-EPI (cmrr_mbep2d_se)
TR 6500 ms
TE 40.6 ms
Flip angle 90°
Voxel size 1.7 mm isotropic
Matrix 124 × 124
Phase encoding dirs AP and PA (paired)
Total readout time 36.3 ms
Effective echo spacing 0.295 ms
Sessions All functional sessions (ses-02 through ses-30)

AP/PA pairs are acquired at the start of each functional session for TOPUP-based distortion correction.